Is there a metaphlan setting analagous to
humann_config that allows me to set the default database for metaphlan to use? The default conda install on my cluster points to the home directory, which is on a slow-ish drive. I know I can use
--bowtie2db /path/to/db, but is there a way to to this permanently?
The help output implies that setting
$METAPHLAN_BOWTIE2_DB might work, but it’s not set by default.