Pasted from here: https://github.com/biobakery/MetaPhlAn/issues/209
First, thank you for providing MetaPhlAn! I’m excited to use it.
I would like to use a specific genome catalogue, namely OceanDNA, Nishimura & Yoshizawa, 2022, as part of my reference database.
I could find the Customizing the database section in the docs, however it’s unclear to me how to generate the SGBs and identify the markers for that MAG catalogue. Is there a workflow/tool/script to do that?
Or alternatively, would you consider adding OceanDNA to your next database update?
Thank you for any assistance you can provide!