MetaPhlAn 4 for paired end reads of multiple samples

Hi,
I am new to the MetaPhlan microbial community profiling. I have dataset of shotgun metagenomic raw reads for 62 samples, i.e., 124 paired end reads. I would like to run all the samples together in MetaPhlan 4. I will run it on remote server. Please help me in this regard.

Hi @anbu_arun
Please, have a look to the MetaPhlAn 4 tutorial MetaPhlAn 4 · biobakery/MetaPhlAn Wiki · GitHub and documentation MetaPhlAn 4 · biobakery/MetaPhlAn Wiki · GitHub