Hello bioBakery help forum,
I am running masslin2 for 530K associations from Humann3 genefamily_relab.tsv output. Summed Uniref90 to find genus associations with my exposure. The last step below takes forever. It’s running for more than 10 hours now, this is still counting…Could you help me solve this issue? The run is in HPC so I don’t see a memory problem.
2021-01-07 23:01:52 INFO::Counting total values for each feature