The bioBakery help forum

Kneaddata_build_database error

Hi,
when i run the fllow command,
kneaddata_build_database Homo_sapiens.GRCh38.dna.primary_assembly.fa -o hum
an_genome
it report an error showing on the fig

Hello, Thank you for the detailed post and sorry for the confusing error message. It looks like the kneaddata build database script is not currently python3 compatible. We will make those changes on our end and include them in the next release. Until then would you run the script with python 2? I think this should resolve the errors that you are seeing.

Thank you,
Lauren