Hi there!!! @franzosa @fbeghini @lauren.j.mciver @Kelsey_Thompson -
I am using kneaddata only for decontamination by bypassing
trf steps. I have run my control and test datasets in two different computers where the two kneaddata versions are different, i.e. 0.7.4 and 0.7.10. The outputs were analysed by HUMAnN 3.0.
Now, considering the two different versions of kneaddata, can I compare the control and test HUMAnN output? Or, I should re-run the whole process again with exactly same versions of kneaddata and again run with HUMAnN?