Humann3 to Metacyc Smart table?

Microbial community profiling HUMAnN
1

Hello wonderful Biobakery team!

I am trying to work out if its possible to import the gene families output as a SmartTable on the metacyc website to perform some enrichment analysis. I have looked through the humann_regroup_table options, but nothing has worked so far. I have tried regrouping as metacyc reactions, but i think that is still a little too high order for the enrichment analysis.

Thanks!

2

I’m not familiar with the SmartTable concept. Can you point to an example of the expected input? That would enable me to determine if HUMAnN can produce an output file that would be appropriate. My guess would’ve been the same as yours - i.e. to regroup to RXN abundances.