I’m interested in working with HumanN3’s gene families output from the metagenomics (MGX) HMP2.
Since the merged gene families tsv file is not available for metagenomics data and I cannot download the functional profile via http, I accessed the ftp server and navigated to the MGX subdirectory, but I found that the products from the most recent date (2018-05-04) are from HumanN2.
Is there any way I can download the merged genefamilies.tsv file from HumanN3 or at least the individual functional profiles so I can merge the gene families myself?
Thank you very much,
Hi @gsergom ,
You will be able to find the Humann3 gene families output here : https://ibdmdb.org/tunnel/public/HMP2/WGS/1818/products. Please navigate to “
Functional profile 3.0” and “
Taxonomic profile 3.0” tabs.
Hi @sagunmaharjann ,
Thank you for your response, but the problem is that I can’t download the 1638 files via the website because I get an error: Request URI too large.
Is there any way I can download them all at the same time?
Thank you again,
I am having the same issue as @gsergom except I am trying to access HMP2 metatranscriptomic data (MTX) files. I can see all HumanN3 Metatranscriptome files under Metatranscriptomes Products | IBDMDB “
Functional profile 3.0 ”, but I cannot find these HumanN3 files using the ftp server. Any advice on batch downloading for HumanN3 would be appreciated !