Hi All,
I am unable to renormalize the stratified output using the humann2_renorm_table. Error below
Treating MSA-1003_kneaddata_genefamilies_stratified.tsv as stratified output, e.g. [‘UniRef90_unknown’, ‘g__Escherichia.s__Escherichia_coli’]
Traceback (most recent call last):
File “/rbxdata3/users/kpgv576/miniconda3/bin/humann2_renorm_table”, line 11, in
sys.exit(main())
File “/rbxdata3/users/kpgv576/miniconda3/lib/python2.7/site-packages/humann2/tools/renorm_table.py”, line 118, in main
special = args.special==“y”,
File “/rbxdata3/users/kpgv576/miniconda3/lib/python2.7/site-packages/humann2/tools/renorm_table.py”, line 104, in normalize
totals = totals_by_level[level] if levelwise else totals_by_level[1]
KeyError: 1
Has anyone seen this before?
Thanks.
-Deepak