Hi,
I am a novice, the following is part of my output results, I do not know whether it is the same level, I need all of them, or only analyze one at a time, how to achieve, hope to get help, thank you
Lachnospiraceae_bacterium_CLA_AA_H244
Lachnospiraceae_bacterium_AM48_27BH
Lachnospiraceae_bacterium_CLA_AA_H215
Lachnospiraceae_bacterium
Lachnospiraceae_bacterium_OM04_12BH
Lachnospiraceae_bacterium_2_1_46FAA
Lachnospiraceae_bacterium_NSJ_143
Lachnospiraceae_bacterium_oral_taxon_096
Lachnospiraceae_unclassified_SGB47637
Lachnospiraceae_bacterium_EP_SM_12S_S03
Lachnospiraceae_unclassified_SGB4708
Lachnospiraceae_bacterium_OF09_6
Lachnospiraceae_unclassified_SGB4550
Eubacterium_rectale
Eubacterium_ventriosum
Eubacterium_ramulus
Eubacterium_hominis
Eubacterium_sp_OM08_24
Eubacterium_SGB4961
merge_metaphlan_tables.py *_profile.txt > merged_abundance_table.txt
grep -E "s__|clade" merged_abundance_table.txt | grep -v "t__" | sed 's/^.*s__//g' | sed -e 's/clade_name/body_site/g' | sed "s/_1_kneaddata_paired-abundance//g" > merged_abundance_table_species.txt
Best
JianXiZhang