After I posed the question above, I could install lefse from github using the codes below;
git clone https://github.com/SegataLab/lefse.git cd lefse python setup.py install
I thought the latest version lefse was installed because the sentence below was shown finally.
Finished processing dependencies for lefse==1.1.2
Anyway I would like to confirm if I actually succeeded to install the latest version of lefse.
However the option
--version doesn’t tell me the number of version of lefse.
Does anyone know how to see the version of lefse used now?