Hi,
I would like to ask how halla deals with missing data. I saw in previous versions the argument “MISSING_CHAR” but it’s no longer in the help message from the current version.
Thanks
Hi,
I would like to ask how halla deals with missing data. I saw in previous versions the argument “MISSING_CHAR” but it’s no longer in the help message from the current version.
Thanks
HAllA uses pandas.read_table
to read in the data, so it detects missing values using that. You can scroll down to na_values
to see the strings that get detected as NAs. HAllA also adds empty cells to that list.
When evaluating associations, NAs are dropped.