Hallagram does not work

Downstream analysis and statistics HAllA
1

I am a biomedical engineering student and I am currently doing a project where I am going to use HAllA. I downloaded the tool and ran the example: “halla -X X_16_100.txt -Y Y_16_100.txt --output synthetic_output” as given on https://bitbucket.org/biobakery/biobakery/wiki/halla. I also wanted the hallagram, so I ran “cd synthetic_output” and “hallagram similarity_table.txt hypotheses_tree.txt associations.txt --outfile hallagram.png”. Though I did not get the expected plot. I am hoping that you can help me. I am running the tool in Anaconda prompt in Windows 10. The output stated that there was some kind of indexerror, so I attached a screenshot of it.

HallagramOutput
HallagramOutput1503×825 48.4 KB

I hope someone can help me.

2

Hello Joan, Thank you for all the information! HAllA was developed and tested on Linux and Mac OS. If you could possibly run in docker on Windows I think it should resolve the errors you are seeing.

Thank you,
Lauren