I’m running kneaddata on my metagenomic samples and everything works perfectly.
but I have a trivial issue.
I used an option
--max-memory 10000m in trimmomatic arguments,
but when check the log file, the max-memory is still fixed at 500m.
My working environment has enough RAM available.
How can I expand maximum memory for trimmomatic?
Maybe I’m misunderstood?
--max-memory 500m means “Setting the maximum memory available during trimmomatic to 500MB”.
Please advise me.