So I have a tree generated for strainphlain with metadata added, but the png I generate with graphlan cuts off the value of the SubjectID I want.
My subject ID would be Rhyticeros_undulatus in my tre.metadata, but the resulting image would show my subjectID as Rhyticeros.
Is there a way for graphlan to ignore “_” when parsing the tre.metadata file? If not, if there a clever way to have metadata values as two terms without directly joining them like “RhyticerosUndulatus”?
input of tre.metadata file
output legend from graphlan
Command I use to run graphlan:
plot_tree_graphlan.py -t RAxML_bestTree.s__Escherichia_coli.StrainPhlAn3.tre.metadata -m SubjectID