Fungal signatures

Hi there,
I am using MetaPhlAn 3 via YAMP (The YAMP workflow · alesssia/YAMP Wiki · GitHub) for the shotgun meta genome data analysis of the human gut microbiome data generated using shotgun sequencing on illumina platform (Paired end data). I am getting the output data for the bacteria, archaea and viruses. However, we have not detected any fungal signatures in the dataset. In the MetaPhlAn description it has been mentioned that it gives information on the eukaryote also, and in the ChocoPhlAn database I have seen the files for fungal taxa (so information on the fungal taxa is expected). Please let me know how can we get the information on fungal signatures.
Earlier I have tried directly by using MetaPhlAn 2 and I have not detected any fungal signatures there too. Please let me know how can we get the data on this.