Hi @mallamuneer , To update the default folder location, run the config tool to update the configuration file to the location of your manually downloaded data. Replace “FOLDER” in the command below with your new folder location. Then run “$ humann_config” to confirm that the new folder is listed.
$ humann_config --update database_folders chocophlan FOLDER
That should update the location. Then try running the workflows again. Let me know how it goes!
Thanks!
Lauren
Hi @lauren.j.mciver
Thanks for all the help through out
I tried the humann_config command but ended up with error
I first ran this
humann_config --update database_folders chocophlan /home/qiime2/miniconda/envs/qiime2-2021.4/lib/python3.8/site-packages/humann/data/chocophlan
ERROR: Unable to add new name ( chocophlan ) to existing section ( database_folders ) to config file: /home/qiime2/miniconda/envs/qiime2-2021.4/lib/python3.8/site-packages/humann/humann.cfg
then I also tried to run this
(qiime2-2021.4) qiime2@qiime2core2021-4:~$ humann_config --update database_folders chocophlan /home/qiime2/biobakery_workflows_databases/humann/nucleotide_database/full_chocophlan.v201901_v31
ERROR: Unable to add new name ( chocophlan ) to existing section ( database_folders ) to config file: /home/qiime2/miniconda/envs/qiime2-2021.4/lib/python3.8/site-packages/humann/humann.cfg
Badly stuck, kindly suggest
Thanks and Regards
Hi @mallamuneer , Sorry that command had a typo from my end! It should be “nucleotide” instead of “chocophlan”. Please try:
$ humann_config --update database_folders nucleotide /home/qiime2/miniconda/envs/qiime2-2021.4/lib/python3.8/site-packages/humann/data/chocophlan
Sorry again!
Lauren