The bioBakery help forum

Dropbox link to hmp2_analysis

I have trying to reproduce the analyses as done in “Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases” following the code as deposited at the following repo.

https://bitbucket.org/biobakery/hmp2_analysis/src/default/

config_env.r file has following as the data source:

# Paths used by many analyses

HMP2_root <- “/path/to/Dropbox (Huttenhower Lab)/HMP2”

HMP2_data <- file.path(HMP2_root, “data”)

if (!dir.exists(HMP2_root)) {

stop(“Fill in HMP2_root in env_config.r to use the HMP2 scripts!”)

}

Is it possible to provide those data used as an input in the hmp2_analysis? or direct me to the data link via dropbox link?