The bioBakery help forum

dbGAP SRA samples

From: jgadeav@ibmcp.upv.es

We are trying to download the raw data of the human RNAseq described in your paper, We got the GEO IDs, but there is no link to SRA. We can not acces to those raw data from ibdmdp neither. Could you please help us and provide these raw data?
thanks in advance
Jose

The GEO IDs we request are:
GSM3043378
GSM3043394
GSM3043397
GSM3043403
GSM3043412
GSM3043415
GSM3043419
GSM3043424
GSM3043425
GSM3043427
GSM3043430
GSM3043436
GSM3043437
GSM3043440
GSM3043449
GSM3043450
GSM3043459
GSM3043462
GSM3043468
GSM3043471
GSM3043473
GSM3043475
GSM3043487
GSM3043490
GSM3043496
GSM3043507
GSM3043521
GSM3043524
GSM3043526
GSM3043530
GSM3043536
GSM3043539
GSM3043547
GSM3043554
GSM3043560
GSM3043565
GSM3043566
GSM3043572
GSM3043574
GSM3043576
GSM3043578
GSM3043595
GSM3043604
GSM3043606
GSM3043616
GSM3043622
GSM3043626

Hi Jgadeav,

We are currently working on depositing the SRA samples and will update you shortly when available.

Thanks,
Sagun

Dear @sagunmaharjann,

Do you have updates on this? Thanks!

Hi Zhan,

Yes, the SRA deposition has been completed under the Study Accession: phs001626.v1.p1.

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001626.v1.p1

Thanks,
Sagun