The result I get when using Lefse analysis amazes me :
- When producing the cladogram from my data which are expressed in percent
with total abundances =100 for all samples, the “Bacteria” node (ie its
sole root) appeared colored, ie as significantly affected by one of the
treatment as compared to the other one: how could this happen? how
should it be interpreted?
I would be more grateful if you could help me understand that.
Lefse T6 F344 D60Male FORvsFSham.txt (121.3 KB)