I recently installed picrust from the source and cannot run any .py files even when using python before running the script. Currently, I am getting the error “no such file or directory”. I am also having trouble running any .py scripts. After some inspection, I found that pytest does not have any items in it, making me think it might be a problem with the installation, however, the original file before creating the environment has all the necessary dependencies. We are wondering if installing from the source produces an incorrect download of dependencies and if anyone was able to fix this for their own scripts? Or, if there is any advice on how to create the conda environment to ensure that all dependencies in the file are properly downloaded.
For reference, conda env create -f picrust2-env.yaml is the line I am using the install the environment.