Dear all,
I am new to this forum and I would greatly appreciate your advice:
I ran the vis function of biobakery3:
biobakery_workflows vis --input biobakery_completed_analysis --output Danyvid_vis --project-name Danyvid
And I encountered this error:
Traceback (most recent call last):
File “/home/zhuw9/.local/bin/vis.py”, line 123, in
args.introduction_text = “{#id .class width=675px height=505px}\n\n”+intro_methods
File “/home/zhuw9/.local/lib/python3.8/site-packages/biobakery_workflows/utilities.py”, line 1170, in get_package_file
found_files=list(filter(lambda file: os.path.isfile(os.path.join(package_install_folder,file)),os.listdir(package_install_folder)))
FileNotFoundError: [Errno 2] No such file or directory: ‘/panfs/accrepfs.vampire/home/zhuw9/.local/lib/python3.8/site-packages/biobakery_workflows/…/images’
my.error (END)
I tried to fix it using the “ln” trick mentioned here: Cannot get biobakery_workflows vis to run but I am not sure how to locate the directory of “images” as I installed it using Pip.
Any advice would be greatly appreciate it!
Best,
Wenhan