I’m attempting to make use of the
wmgx_wmtx workflow but have run into an issue with grid computing. I’m working on an SGE and planned to use 64 cores. From the log files, it looks like the first 64 jobs dispatched just fine! The correct Kneaddata output files have been generated, the
.rc files in the
sge_files directory all show exit statuses of 0, and running
qacct also shows that each of the 64 jobs completed with
exit_status 0. Unfortunately, it looks like the next batch of jobs never got sent out. From the
anadama.log file, it looks
get_queue_status was only called once, roughly when the last of the 64 jobs were finishing up. It has been about 16 hours since then.
I have had no errors, and the parent process is still running. I would appreciate help figuring out why the second batch of jobs never got submitted.