Warning message: geom_smooth() using formula 'y~x"

Downstream analysis and statistics MaAsLin
1

Hi experts,

I am trying to run masslin2. receveid these messages:

2022-04-25 00:49:17 INFO::Creating scatter plot for continuous data, Survival_days vs f__Lachnospiraceaeg__Anaerostipess__AB824381_1_1527
2022-04-25 00:49:18 INFO::Creating scatter plot for continuous data, Survival_days vs f__Ruminococcaceaeg__s__EU006203_1_1471
geom_smooth() using formula ‘y ~ x’
geom_smooth() using formula ‘y ~ x’
geom_smooth() using formula ‘y ~ x’
geom_smooth() using formula ‘y ~ x’
geom_smooth() using formula ‘y ~ x’
geom_smooth() using formula ‘y ~ x’
geom_smooth() using formula ‘y ~ x’
geom_smooth() using formula ‘y ~ x’
geom_smooth() using formula ‘y ~ x’
Warning message:
In var(if (is.vector(x) || is.factor(x)) x else as.double(x), na.rm = na.rm) :
NAs introduced by coercion

When you have time, could you let me know how to avoid these warnings,

Thank you,
Kind regards,
Le Phuong Nguyen.

2

The geom_smooth() message is to be expected and not a cause for concern. I think the other warning message is the same issue from your other thread.

3

Hi Andrew,

Thank you very much for your explanation,

Kind regards,
Le Phuong Nguyen.