The bioBakery help forum

Softwares for statistitical analysis of MetaPhlAn output

Hi there!!! @fbeghini
I have profiled shotgun metagenome data with MetaPhlAn3. Now, I want to do statistical analysis (e.g. alpha-, beta- diversity comparison, rarefaction graph, boxplots, PCOA, etc) with the output data. Can anyone please suggest me which software can I use? (provided, I don’t know language like R, python, etc.)

Thanks and regards,

Can we make rarefaction curves for the diversity analysis with metaphlan3?