Hi there!!!
I have run already submitted datasets with MaAsLin2 with default parameters i.e., q-value 0.25. Now, when I use q-value as 0.05 or 0.1, I rarely get any differential features.
Considering that, do you think it should be ok to report the significant features as biomarkers with q-value 0.25?
NOTE:Significant features from MaasLin output (q-value 0.25) are mostly common to that of LefSe output.
Thanks,
DC7