question about unclassified

The latest version available is 3.0.1, you can check for new releases [here](Package Recipe 'metaphlan' — Bioconda documentation, the latest database is v30.

To answer this, you should manually check how much memory uses to profile one of the metagenomes, more or less it should not require more than 6GB.

See this Unexpected output (format) - #2 by fbeghini