Problems with Eggnog renaming from grouped table

Microbial community profiling HUMAnN
1

Hey team,

I’ve run HUMAnN (v3.7) and regrouped my UniRef90 table to Eggnog. Now, I’m trying to rename the Eggnog table to be more human readable, but humann_rename_table can’t find the Eggnog names mapping file.

What I have done:

I’ve successfully installed the utility mapping files (humann_databases --download utility_mapping full download_dir --update-config yes)

I’ve regrouped the table (humann_regroup_table -i <uniref90_genefams_table> -g uniref90_eggnog -o <eggnog_grouped_table>)

I’ve also been able to regroup and rename my tables based on GO and PFams.

What breaks:

humann_rename_table -i <eggnog_grouped_table> -n eggnog -o <eggnog_grouped_named_table>

Which results in a FileNotFound error:
FileNotFoundError: [Errno 2] No such file or directory: '/path/to/conda_environment/lib/python3.7/site-packages/humann/tools/../data/misc/map_eggnog_name.txt.gz'

Is there somewhere I can download map_eggnog_name.txt.gz?

2

That file should be part of the (full) HUMAnN utility mapping database if you have that downloaded?