Hi @fbeghini
I found in the metaphlan --help parametres that ther is a way to get the marker_ab_table normalized by the metagenome size and I got to obtain the table for one sample now I have two questions:
- How do I reach to obtain the taxonomy of the marker abundance table?
- How do I obtain the merged abundance table for all the samples?
Thanks in Advance
P.S. sorry for asking too many questions…