The bioBakery help forum
METAPHLAN3: Bowtie2DB output files need the size of the metagenome using the --nreads parameter
Microbial community profiling
MetaPhlAn
fbeghini
May 20, 2021, 6:53am
13
I merged the PR, it should not take long to be available now
2 Likes
show post in topic
Related topics
Topic
Replies
Views
Activity
[Issue] --nreads parameter when running MetaPhlAn using SAM files as input
MetaPhlAn
2
227
March 5, 2024
Error in profiling a single metagenome from raw reads
MetaPhlAn
1
210
May 18, 2022
Sam file & number of reads
MetaPhlAn
1
678
April 12, 2021
Issue with bowtie2db trying to install MetaPhIan3
MetaPhlAn
10
3120
January 28, 2022
Metaphlan 4 error: nreads, avg_read_length = list(map(float, read_fastx_stderr[0].decode().split()))
MetaPhlAn
2
262
March 22, 2023