Hi,
I am using MetaPhlAn 3.0 with the following command. However, it does not generate any results.
metaphlan scaffolds.fasta --input_type fasta -o profiled_metagenome.txt
Results::
| #clade_name | NCBI_tax_id | relative_abundance | additional_species |
|---|---|---|---|
| UNKNOWN | -1 | 100.0 |