I just upgraded to metaphlan4 and am appreciating the improvements so far. Just wondering when the 4.1 release will be available so I can incorporate eukaryotes and viruses to my analysis.
If it’s going to be awhile is there any guidance or suggestions for combining the new bacteria database (metaphlan 4) with the previous eukaryote, virus, and archaea databases ( metaphlan 3). Would it be better to just run v4 and v3 separately to get the info I want?
Any information you can share would be much appreciated!