The bioBakery help forum

Merge biom files in MetaPhlAn

Hello,
I want to merge the biom files into one biom file for statistic analysis in RStudio.
Can anyone please tell me how can I merge biom files into one biom file?

Thanks,
MinJi

Hi @MinJi_Kim,
MetaPhlAn does not provide a script for merging BIOM files, but you could have a look at the biom.table.Table.merge function from the biom-format python package

Thank you for replying :slight_smile: