Mapping MetaCyc Pathways


I’m interested in particular MetaCyc pathways, but they don’t show up in the pathabundance or pathcoverage results. My pathways of interest are missing. Is there a way I can look for specific pathways in my shotgun sequences?

Thank you

I tried turning MinPath off and re-running my samples, but the pathways are still missing.

It’s odd because the genes from the pathway show up in the genefamilies file, EC numbers, but the corresponding pathway does not.

Any help would be appreciated.

Hello, I have the same problem. I am trying to figure out better what happens with the pathway calculations…