Hi,
I am running an issue with “Format Data for LEfSe” Step. Below are the error reports. Thank you for your help!
Dataset Error Report
An error occurred while running the tool LEfSe_for.
Details
Execution resulted in the following messages:
Fatal error: Exit code 1 ()
Tool generated the following standard error:
Traceback (most recent call last): File “/usr/bin/lefse_format_input.py”, line 8, in sys.exit(format_input()) File “/usr/lib/python3.6/site-packages/lefse/lefse_format_input.py”, line 437, in format_input class_sl,subclass_sl,class_hierarchy = get_class_slices(list(zip(cls[‘class’], cls[‘subclass’], cls[‘subject’])))
KeyError: ‘subject’
Here is my .txt file
all_D6.txt (2.9 KB)