Hello,
I used the command humann_regroup_table --input ${genefamilies} -g uniref90_ko -u N -p N -o ${meta.id}.KO.txt and encountered the error: humann_regroup_table: error: argument -g/--groups: invalid choice: 'uniref90_ko' (choose from 'uniref90_rxn', 'uniref50_rxn'). However, my previous environment worked fine. As shown in the image, after updating HUMAnN, the -g option in humann_regroup_table --help only has two choices: uniref90_rxn and uniref50_rxn, as shown in the image below. What should I do?
Here are the databases I selected:
humann_nucleotide_db = "/ssd1/metagenome_data/humann/chocophlan_v31_201901/"humann_protein_db = "/ssd1/metagenome_data/humann/uniref90_v201901_ec_filtered/"humann_utility_mapping_db = "/ssd1/metagenome_data/humann/mapping_v201901/"
