The bioBakery help forum

Graphlan error (Classes not implemented for external annotations)

Hi all!

I am trying to generate a tree figure using Graphlan. But I am getting an error when using the graphlan_annotate.py script:

Classes not implemented for external annotations.

Here is the command used:
graphlan_annotate.py all.concat.mafft.trimal.99.fasta.treefile all.concat.mafft.trimal.99.fasta.annot.xml --annot annot.txt

Any idea what could be the problem?

Thank you!

Best,
Mahwash