I do know this command will produce three files, including genefamilies, pathabundance and pathcoverage
$ humann --input $SAMPLE --output $OUTPUT_DIR
I was wondering if I can produce pathabundance and pathcoverage only without genefamilies.
I was used the previous version of database, including uniprot, metacyc, mapping file, to perform the analysis. However, comparing uniprot annotation 2019 with 2019b, both files are exactly the same.
Therefore I don’t want to spend the time for producing genefamilies again.
Is it possible?