Gene annotation for IBDMDB Host Transcriptomics Data

Data resource IBDMDB
1

Dear BioBakery team,

First of all, I would like to congratulate you on the IBDMDB project.

We are currently analyzing IBDMDB host transcriptomics data and aim to transform the provided counts into TPM for deconvolution analysis. For this, we would like to ask which gene annotation reference and version (e.g., GENCODE, Ensembl) were used to generate the dataset.

Thank you very much for your help.