Hi!
I’m using MaAsLin2 version 1.2.0, and I want to change the layout for the output plots, is it possible to extract the processed data so I can redo the plots myself?
Thank you!
Hi @silverno,
Which plots are you looking to recreate? The heatmap can easily be re-made from the significant results tsv file.
The scatter and boxplot are a bit more complicated if you did not feed MaAsLin relative abundance data - but can easily be recreated in ggplot using your input data table usually, as they are typically metadata on the x-axis and relative abundance of the feature on the y-axis (e.g. pre-transformed data). Already on our list for the next iteration of MaAsLin is to print out the fully processed data tables.
I hope this helps! Let me know if it doesn’t.
Best,
Kelsey
I was hoping to redo the boxplots using processed data. It is good to know the next iteration will include a processed dataset. Thank you so much!
Hi
Has this feature been implemented in Maaslin2?
I need the data that was used for box plots. I could not find sub-table of relative abundance of only significant features in Maaslin2 output folder.
Is there an R script that can be used to extract significant feature relative abundance data from input table (pathabundance.tsv generated by humann3 and normalized to relative abundance)?
Thanks
Gurjit
Hi,
This sounds amazing as I found it
very much useful and informative to be honest. Also, I have gone through this
post which definitely helped me out a lot as a new member I am looking forward
for more such discussions.
Thanks