The bioBakery help forum

Count data preprocessing for HAllA

Hello,

I am new to HAllA and I would like to analyze paired RNA-seq and OTU (16S) data.
How shall I preprocess the raw counts before running HAllA?

Thank you,
Francesca

Hello Francesca, Sorry for the slow response. I was not sure of the answer so I reached out to the main HAllA developer to check. HAllA uses Spearman correlation for scaling for similarity so the scaling of the data prior to running HAllA is not required.

Thank you,
Lauren