Biobakery Workflows: Errors with downloading database, "unpicking error", “topological_sort()" error, and "Unable to find Trimmomatic" error

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I managed to get biobakery_workflows vis to run, I detailed the steps here:

Cannot get biobakery_workflows vis to run

BIG NEWS! I finally managed to get biobakery_workflows vis to run! The solution that worked for me: Create conda env, but not installing biobakery_workflows mamba create -n biobakery_test python=3.7 pip zip gxx_linux-64 pandoc R (If you don’t know mamba, it is a drop-in replacement of conda that is much faster) Go inside the environment: conda activate biobakery_test Install biobakery_workflows and dependencies with pip: pip install numpy matplotlib humann scipy biobakery_workflo…