Biobakery Workflows: Errors with downloading database, "unpicking error", “topological_sort()" error, and "Unable to find Trimmomatic" error

Infrastructure and utilities bioBakery workflows
7

So I couldn’t get this to work with the YAML but this worked for me after investigating the file:

conda create --name biobakery_p3.6 python=3.6
conda activate biobakery_p3.6
conda install -c biobakery -c conda-forge -c bioconda pweave=0.25
conda install -c biobakery -c conda-forge -c bioconda networkx=1.11
conda install -c biobakery -c conda-forge -c bioconda biobakery_workflows
conda install -c biobakery -c conda-forge -c tbb=2020.2 python-leveldb jupyter_client pandoc hclust2 latexcodec r r-vegan

Now I get errors which seem to originate from matplotlib:

 Exception:
  'dict_keys' object has no attribute 'remove'
  Error messages will be included in output document
Traceback (most recent call last):
  File "/usr/local/bin/miniconda3/envs/biobakery_p3.6/bin/wmgx_vis.py", line 133, in <module>
    workflow.go()
  File "/usr/local/bin/miniconda3/envs/biobakery_p3.6/lib/python3.6/site-packages/anadama2/workflow.py", line 800, in go
    self._handle_finished()
  File "/usr/local/bin/miniconda3/envs/biobakery_p3.6/lib/python3.6/site-packages/anadama2/workflow.py", line 832, in _handle_finished
    raise RunFailed()
anadama2.workflow.RunFailed

Any help, pointers or anything would all be very appreciated :).