Metawibele/characterize/abundance_annotation/metawibele_MSPminer_msp

Microbial community profiling MetaWIBELE
1

Dear YancongZhang
Recently, I got an error as follow when running MetaWIBELE-characterize workflow.

Task 79 failed
  Name: mspminer
  Original error:
  Error executing action 0. Original Exception:
  Traceback (most recent call last):
    File "/usr/local/lib/python3.6/dist-packages/anadama2/runners.py", line 201, in _run_task_locally
      action_func(task)
    File "/usr/local/lib/python3.6/dist-packages/anadama2/helpers.py", line 89, in actually_sh
      ret = _sh(s, **kwargs)
    File "/usr/local/lib/python3.6/dist-packages/anadama2/util/__init__.py", line 320, in sh
      raise ShellException(proc.returncode, msg.format(cmd, ret[0], ret[1]))
  anadama2.util.ShellException: 
  [Errno 255] Command `mspminer .../abundance_annotation/MSPminer_setting.cfg > /abundance_annotation/metawibele_MSPminer_msp.run_mspminer.log 2>&1' failed.  
  Out: b''
  Err: b''

I check the file /abundance_annotation/metawibele_MSPminer_msp.run_mspminer.log and and error messages are as follows:

MSPminer - version 1.1.1
(C) Copyright 2016-2019 Enterome & INRA

basic_string::_S_construct null not valid

and I found some answers(https:/stackoverflow.com/questions/12052997/c-exception-occurred-in-script-basic-string-s-construct-null-not-valid).
However,the mspminer is the binary file. Do you have any idea about the error message ?
PS:the screenshot about Mspminer

1666793290070
16667932900701785×492 22.6 KB

Thanks!
qingyu

2

Hi Qingyu,

This issue looks like being fixed in their updated version: MSPminer v1.1.2. Could you try this latest version released on Enterome?

Thanks!
Yancong

3

Dear YancongZhang
Wow，it is a version issue indeed and I solved the problem successfully.Thank you for your help.
Thanks!
Qingyu