Hi @himel.mallick, I have run melonnpan.train() for my data. I think I got some intriguing results running your melonnpan package melonnpan.train() function. Thank you very much. However, I need some help to present these data.
(1) For melonnpanMelonnPan_Trained_Weights.txt: This output file has intercept and bacterial sequence names in first column and metabolite names in the rest of the columns. I think the values of each cell indicate the Spearman coefficient of each compound with the sequence name of that row Am I correct?
(2) Could you please suggest or refer me to a tutorial on how to graphically represent this correlation? In one graph, I would like to show a scatter plot where the x-axis with sequence name (column name ID) and the y-axis with the metabolite names (rest of the columns). In another graph, I would like to show the correlation of my metabolite of interest (column name A) with the sequence names (column name ID).
(3) melonnpanMelonnPan_Training_Summary.txt: what does “model.size” values mean?