Thank you for developing such a wonderful tool. I’d like to use it in my work, but I was unable to completely install the software using conda. When i run the command conda install -c biobakery metawibele, then metawibele_check_install, many software are not download.
Do I need to manually download those software by myself in this conda environment?
Thanks for your interest in MetaWIBELE. Yes, the conda package doesn’t include all required dependencies, so you need to separately install them in your environment. Alternatively, you may want to try the docker version that includes most of the dependent tools except for large software packages and those with licenses (GitHub - biobakery/metawibele: MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome).
Thank you for your reply! I have installed the required software, but I still have an installation problem with MSPminer.
In the Conda environment, I can normally run the command./mspminer MSPminer_setting.cfg and get the output result.
However, when I check the MSPminer install, it has an error.
Could you help me?
You might need to add
mspminer to your $PATH as it might not be included by default. Otherwise, you will see the following message
mspminer: command not found when running mspminer outside its installation folder.