Cannot get biobakery_workflows vis to run

Infrastructure and utilities bioBakery workflows
7

Summary of my trials:

  • biobakery_workflows wmgx_vis of the latest available (to date) Docker image fails with a ‘caption’ error. pip3 freeze informs that biobakery_workflow version is 3.0.0a6 in this image.

  • conda versions of biobakery_workflows fails for versions:

    • 3.1 (latest) installed with Python 3.6: fails with ‘caption’ error
    • 3.1 (latest) installed with Python 3.7: fails with ‘Pweave import’
    • 3.0.0a7 build pyh0b62126_0 installed with Python 2.7: fails with ‘caption’ error
    • 3.0.0a7 build pyh0b62126_0 installed with Python 3.6: fails with ‘caption’ error
    • 3.0.0a7 build pyh0b62126_0 installed with Python 3.10: fails with ‘Pweave import’
    • 3.0.0a4 build py37hb80360e_0 installed with Python 3.7: fails with ‘Pweave import’
    • 3.0.0a4 build pyh41f93f0_0 installed with Python 3.10: fails with ‘Pweave import’
    • 0.15.1 build py27h10287d5_0 installed with Python 2.7: fails with ‘caption’ error

So, when installed with Python >= 3.7, fails with Pweave import. According to this post, it is because Pweave version needs to be <=v0.25.

Anyway, the problem is at least 2 years old (!) as the latest Docker image is also affected.

I will try with older Docker images, but … well… not encouraging.