Hi Lauren,
That did the trick! Everything ran perfectly, and I got a complete analysis. I went to work on another dataset, following the same procedure and command and I got the following error, so if you could help it would be appreciated!
(mphlan) [scotta@biocomp-0-3 TCAG_Macrolide_2020]$ biobakery_workflows wmgx --input Raw_Reads --output Macrolide_Output --threads 32 --pair-identifier _R1
Traceback (most recent call last):
File “/home/AAFC-AAC/scotta/miniconda3/envs/mphlan/bin/wmgx.py”, line 30, in
from anadama2 import Workflow
File “/home/AAFC-AAC/scotta/miniconda3/envs/mphlan/lib/python3.7/site-packages/anadama2/init.py”, line 83, in
from .workflow import Workflow
File “/home/AAFC-AAC/scotta/miniconda3/envs/mphlan/lib/python3.7/site-packages/anadama2/workflow.py”, line 17, in
import networkx as nx
File “/home/AAFC-AAC/scotta/miniconda3/envs/mphlan/lib/python3.7/site-packages/networkx/init.py”, line 61, in
import networkx.generators
File “/home/AAFC-AAC/scotta/miniconda3/envs/mphlan/lib/python3.7/site-packages/networkx/generators/init.py”, line 16, in
from networkx.generators.intersection import *
File “/home/AAFC-AAC/scotta/miniconda3/envs/mphlan/lib/python3.7/site-packages/networkx/generators/intersection.py”, line 5, in
from networkx.algorithms import bipartite
File “/home/AAFC-AAC/scotta/miniconda3/envs/mphlan/lib/python3.7/site-packages/networkx/algorithms/init.py”, line 79, in
import networkx.algorithms.tree
File “/home/AAFC-AAC/scotta/miniconda3/envs/mphlan/lib/python3.7/site-packages/networkx/algorithms/tree/init.py”, line 6, in
from .decomposition import *
File “/home/AAFC-AAC/scotta/miniconda3/envs/mphlan/lib/python3.7/site-packages/networkx/algorithms/tree/decomposition.py”, line 5, in
from networkx.algorithms import moral, complete_to_chordal_graph, chordal_graph_cliques
ImportError: cannot import name ‘complete_to_chordal_graph’ from ‘networkx.algorithms’ (/home/AAFC-AAC/scotta/miniconda3/envs/mphlan/lib/python3.7/site-packages/networkx/algorithms/init.py)