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#mpa_vOct22_CHOCOPhlAnSGB_202212
#/cluster/projects/nn8021k/Conda-env/metaphlan4/bin/metaphlan --bowtie2db /cluster/projects/nn8021k/Metaphlan4_database /cluster/work/users/ahmedbar/proride/Metaphlan/bowtie/sorted_bamfilt_trimmed_254_ProRIDE__A_1326__V350144121_L1-2-3-4_62_R1_metagenome.bowtie2.bz2 -t rel_ab_w_read_stats --nproc 5 --input_type bowtie2out
#94417622 reads processed
#SampleID	Metaphlan_Analysis
#estimated_reads_mapped_to_known_clades:86430217
#clade_name	clade_taxid	relative_abundance	coverage	estimated_number_of_reads_from_the_clade
k__Bacteria	2	100.0	38.88965	86430217
k__Bacteria|p__Actinobacteria	2|201174	99.29028	38.61364	85197192
k__Bacteria|p__Proteobacteria	2|1224	0.42055	0.16355	809356
k__Bacteria|p__Firmicutes	2|1239	0.28917	0.11246	423669
k__Bacteria|p__Actinobacteria|c__Actinomycetia	2|201174|1760	99.29028	38.61364	85197192
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	2|1224|1236	0.42055	0.16355	809356
k__Bacteria|p__Firmicutes|c__Bacilli	2|1239|91061	0.27476	0.10685	412117
k__Bacteria|p__Firmicutes|c__Negativicutes	2|1239|909932	0.01441	0.0056	11552
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales	2|201174|1760|85004	99.03743	38.51531	84943326
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales	2|1224|1236|91347	0.42023	0.16343	808646
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales	2|1239|91061|1385	0.26921	0.10469	407890
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Propionibacteriales	2|201174|1760|85009	0.21781	0.0847	218242
k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales	2|1239|909932|1843489	0.01441	0.0056	11552
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales	2|1239|91061|186826	0.00555	0.00216	4227
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales	2|1224|1236|135623	0.00032	0.00012	710
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae	2|201174|1760|85004|31953	99.03743	38.51531	84943326
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae	2|1224|1236|91347|543	0.42023	0.16343	808646
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Alicyclobacillaceae	2|1239|91061|1385|186823	0.26921	0.10469	407890
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Propionibacteriales|f__Propionibacteriaceae	2|201174|1760|85009|31957	0.21781	0.0847	218242
k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales|f__Veillonellaceae	2|1239|909932|1843489|31977	0.01441	0.0056	11552
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Corynebacteriales|f__Corynebacteriaceae	2|201174|1760|85007|1653	0.00884	0.00344	8531
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Dermabacteraceae	2|201174|1760|85006|85020	0.00655	0.00255	9536
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae	2|1239|91061|186826|1300	0.00555	0.00216	4227
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Promicromonosporaceae	2|201174|1760|85006|85017	0.00283	0.0011	2620
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae	2|1224|1236|135623|641	0.00032	0.00012	710
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium	2|201174|1760|85004|31953|1678	99.03743	38.51531	84943326
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia	2|1224|1236|91347|543|561	0.38324	0.14904	726943
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Alicyclobacillaceae|g__Alicyclobacillus	2|1239|91061|1385|186823|29330	0.26921	0.10469	407890
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Propionibacteriales|f__Propionibacteriaceae|g__Cutibacterium	2|201174|1760|85009|31957|1912216	0.21781	0.0847	218242
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella	2|1224|1236|91347|543|570	0.037	0.01439	81703
k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella	2|1239|909932|1843489|31977|29465	0.01441	0.0056	11552
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Micrococcaceae|g__Rothia	2|201174|1760|85006|1268|32207	0.00946	0.00368	7468
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium	2|201174|1760|85007|1653|1716	0.00884	0.00344	8531
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Dermabacteraceae|g__Brachybacterium	2|201174|1760|85006|85020|43668	0.00655	0.00255	9536
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus	2|1239|91061|186826|1300|1301	0.00555	0.00216	4227
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Micrococcaceae|g__Micrococcus	2|201174|1760|85006|1268|1269	0.00551	0.00214	5399
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Promicromonosporaceae|g__Isoptericola	2|201174|1760|85006|85017|254250	0.00283	0.0011	2620
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Micrococcaceae|g__Kocuria	2|201174|1760|85006|1268|57493	0.00185	0.00072	2070
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio	2|1224|1236|135623|641|662	0.00032	0.00012	710
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium_bifidum	2|201174|1760|85004|31953|1678|1681	96.54108	37.54448	82477836
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium_dentium	2|201174|1760|85004|31953|1678|1689	2.49095	0.96872	2460664
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli	2|1224|1236|91347|543|561|562	0.38324	0.14904	726943
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Alicyclobacillaceae|g__Alicyclobacillus|s__Alicyclobacillus_acidiphilus	2|1239|91061|1385|186823|29330|182455	0.26921	0.10469	407890
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Propionibacteriales|f__Propionibacteriaceae|g__Cutibacterium|s__Cutibacterium_avidum	2|201174|1760|85009|31957|1912216|33010	0.21781	0.0847	218242
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella|s__Klebsiella_variicola	2|1224|1236|91347|543|570|244366	0.037	0.01439	81703
k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella_seminalis	2|1239|909932|1843489|31977|29465|1502943	0.01441	0.0056	11552
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_mucilaginosa	2|201174|1760|85006|1268|32207|43675	0.00946	0.00368	7468
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium_accolens	2|201174|1760|85007|1653|1716|38284	0.00884	0.00344	8531
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Dermabacteraceae|g__Brachybacterium|s__Brachybacterium_paraconglomeratum	2|201174|1760|85006|85020|43668|173362	0.00655	0.00255	9536
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_lactarius	2|1239|91061|186826|1300|1301|684066	0.00555	0.00216	4227
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Micrococcaceae|g__Micrococcus|s__Micrococcus_luteus	2|201174|1760|85006|1268|1269|1270	0.00551	0.00214	5399
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium_longum	2|201174|1760|85004|31953|1678|216816	0.00539	0.0021	4826
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Promicromonosporaceae|g__Isoptericola|s__Isoptericola_variabilis	2|201174|1760|85006|85017|254250|139208	0.00283	0.0011	2620
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Micrococcaceae|g__Kocuria|s__Kocuria_palustris	2|201174|1760|85006|1268|57493|71999	0.00185	0.00072	2070
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio|s__Vibrio_campbellii	2|1224|1236|135623|641|662|680	0.00032	0.00012	710
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium_bifidum|t__SGB17256	2|201174|1760|85004|31953|1678|1681|	96.54108	37.54448	82477836
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium_dentium|t__SGB17234	2|201174|1760|85004|31953|1678|1689|	2.49095	0.96872	2460664
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli|t__SGB10068	2|1224|1236|91347|543|561|562|	0.38324	0.14904	726943
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Alicyclobacillaceae|g__Alicyclobacillus|s__Alicyclobacillus_acidiphilus|t__SGB30417	2|1239|91061|1385|186823|29330|182455|	0.26921	0.10469	407890
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Propionibacteriales|f__Propionibacteriaceae|g__Cutibacterium|s__Cutibacterium_avidum|t__SGB16953	2|201174|1760|85009|31957|1912216|33010|	0.21781	0.0847	218242
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella|s__Klebsiella_variicola|t__SGB10114	2|1224|1236|91347|543|570|244366|	0.037	0.01439	81703
k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella_seminalis|t__SGB6923	2|1239|909932|1843489|31977|29465|1502943|	0.01441	0.0056	11552
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Micrococcaceae|g__Rothia|s__Rothia_mucilaginosa|t__SGB16986	2|201174|1760|85006|1268|32207|43675|	0.00946	0.00368	7468
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium_accolens|t__SGB17097	2|201174|1760|85007|1653|1716|38284|	0.00884	0.00344	8531
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Dermabacteraceae|g__Brachybacterium|s__Brachybacterium_paraconglomeratum|t__SGB16648	2|201174|1760|85006|85020|43668|173362|	0.00655	0.00255	9536
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_lactarius|t__SGB8065	2|1239|91061|186826|1300|1301|684066|	0.00555	0.00216	4227
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Micrococcaceae|g__Micrococcus|s__Micrococcus_luteus|t__SGB16676	2|201174|1760|85006|1268|1269|1270|	0.00551	0.00214	5399
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium_longum|t__SGB17248	2|201174|1760|85004|31953|1678|216816|	0.00539	0.0021	4826
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Promicromonosporaceae|g__Isoptericola|s__Isoptericola_variabilis|t__SGB17153	2|201174|1760|85006|85017|254250|139208|	0.00283	0.0011	2620
k__Bacteria|p__Actinobacteria|c__Actinomycetia|o__Micrococcales|f__Micrococcaceae|g__Kocuria|s__Kocuria_palustris|t__SGB16663	2|201174|1760|85006|1268|57493|71999|	0.00185	0.00072	2070
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Vibrionales|f__Vibrionaceae|g__Vibrio|s__Vibrio_campbellii|t__SGB9899	2|1224|1236|135623|641|662|680|	0.00032	0.00012	710