#mpa_v30_CHOCOPhlAn_201901 #/opt/anaconda3/envs/mpa/bin/metaphlan metagenomart.fasta --input_type fasta --bowtie2db ../1_database_metaphlan/ --bowtie2out metagenome.bowtie2.bz2 --output_file methaplan3.txt --unknown_estimation --nproc 40 --min_mapq_val -1 #SampleID Metaphlan_Analysis #clade_name NCBI_tax_id relative_abundance additional_species UNKNOWN -1 99.54705 k__Archaea 2157 0.45294985456906034 k__Archaea|p__Euryarchaeota 2157|28890 0.45294985456906034 k__Archaea|p__Euryarchaeota|c__Thermoplasmata 2157|28890|183967 0.45294985456906034 k__Archaea|p__Euryarchaeota|c__Thermoplasmata|o__Thermoplasmatales 2157|28890|183967|2301 0.45294985456906034 k__Archaea|p__Euryarchaeota|c__Thermoplasmata|o__Thermoplasmatales|f__Cuniculiplasmataceae 2157|28890|183967|2301|1747776 0.3511743775866362 k__Archaea|p__Euryarchaeota|c__Thermoplasmata|o__Thermoplasmatales|f__Thermoplasmatales_unclassified 2157|28890|183967|2301| 0.1017754769824241 k__Archaea|p__Euryarchaeota|c__Thermoplasmata|o__Thermoplasmatales|f__Cuniculiplasmataceae|g__Cuniculiplasma 2157|28890|183967|2301|1747776|1747777 0.3511743775866362 k__Archaea|p__Euryarchaeota|c__Thermoplasmata|o__Thermoplasmatales|f__Thermoplasmatales_unclassified|g__Thermoplasmatales_unclassified 2157|28890|183967|2301|| 0.1017754769824241 k__Archaea|p__Euryarchaeota|c__Thermoplasmata|o__Thermoplasmatales|f__Cuniculiplasmataceae|g__Cuniculiplasma|s__Cuniculiplasma_divulgatum 2157|28890|183967|2301|1747776|1747777|1673428 0.3511743775866362 k__Archaea|p__Euryarchaeota|c__Thermoplasmata|o__Thermoplasmatales|f__Cuniculiplasmataceae|g__Cuniculiplasma|s__Cuniculiplasma_sp_C_DKE,k__Archaea|p__Euryarchaeota|c__Thermoplasmata|o__Thermoplasmatales|f__Thermoplasmatales_unclassified|g__Thermoplasmatales_unclassified|s__Thermoplasmatales_archaeon_Gpl k__Archaea|p__Euryarchaeota|c__Thermoplasmata|o__Thermoplasmatales|f__Thermoplasmatales_unclassified|g__Thermoplasmatales_unclassified|s__Thermoplasmatales_archaeon_E_plasma 2157|28890|183967|2301|||667137 0.09662729423037762 k__Archaea|p__Euryarchaeota|c__Thermoplasmata|o__Thermoplasmatales|f__Thermoplasmatales_unclassified|g__Thermoplasmatales_unclassified|s__Thermoplasmatales_archaeon_B_DKE 2157|28890|183967|2301|||1961136 0.0051481827520464835